Hg_chrom5_TN10mRNA_8960
Organism: Heterodera glycines Gene Locus: chr5:413006-417098 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.273 | 0.891 | 0.696 | 1.201 | 0.517 | 0.755 | 1.873 | 1.473 | 1.324 | 0.83 | 2.373 | 1.281 | 0.942 | 1.059 | 1.029 | 0.709 | 1.092 | 0.665 | 0.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8425
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.286
|
0.207
|
0.016
|
0.716
|
0.167
|
0.227
|
0.205
|
0.004
|
0.390
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003992
|
2.000
|
1.000
|
Hsc_gene_14471.t1
|
Hsc_gene_14471.t1;Hsc_gene_14472.t1
|
— |
Q5RA95.1 Protein NDRG3 [Pongo abelii]
|
KAI1725449.1 ndr family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.869|GO:0005575_0.723|GO:0110165_0.718|GO:0005622_0.633|GO:0005737_0.590|GO:0016020_0.549|GO:0065007_0.542|GO:0050789_0.525
|
IPR004142+31-286_32-306+|IPR029058+2-282_11-260+
|
— |
PF03096+31-286+Ndr_family
|
— |
PTHR11034+32-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-347
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.660
|
38655.600
|
6.683
|
1.500
|
26.513
|
10.375
|
45.533
|
54.467
|
14.409
|
12.104
|
49.280
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
943.169
|
2798.654
|
2186.826
|
225.305
|
124.340
|
315.614
|
168.635
|
611.236
|
588.536
|
1273.482
|
979.934
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.586
|
-3.772
|
-3.169
|
-0.889
|
1.358
|
-0.893
|
0.850
|
-1.715
|
— | — | — | — | — |
No JSON data available for plots.