Hg_chrom5_TN10mRNA_8962
Organism: Heterodera glycines Gene Locus: chr5:432257-435874 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.962 | 0.642 | 1.129 | 0.357 | 0.92 | 1.503 | 0.657 | 1.379 | 1.226 | 1.398 | 0.731 | 1.42 | 1.149 | 0.862 | 1.548 | 0.837 | 1.074 | 0.993 | 0.796 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8427
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.565
|
0.393
|
0.092
|
0.803
|
0.206
|
0.260
|
0.154
|
0.051
|
0.096
|
0.393
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009089
|
1.000
|
1.000
|
Hsc_gene_14479.t1
|
Hsc_gene_14478.t1;Hsc_gene_14479.t1
|
— |
Q5ZK84.1 Aldo-keto reductase family 1 member A1 [Gallus gallus]
|
KAI1727046.1 aldo/keto reductase family domain-containing protein [Ditylenchus destructor]
|
WP_280329513
|
0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0008150_0.824|GO:0003674_0.707|GO:0005575_0.668|GO:0110165_0.668|GO:0008152_0.609|GO:0005622_0.578|GO:0003824_0.576|GO:0009987_0.544|GO:0016491_0.514|GO:0016614_0.502|GO:0016616_0.502
|
IPR020471+20-285_39-63_146-163_220-244+|IPR023210+27-285+|IPR036812+16-288_20-287+
|
— |
PF00248+27-285+Aldo/keto_reductase_family
|
— |
PTHR11732+20-285+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-290
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.617
|
32803.550
|
8.274
|
6.000
|
26.897
|
10.690
|
47.931
|
52.069
|
15.172
|
11.724
|
47.241
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
457.582
|
472.484
|
493.369
|
416.145
|
523.455
|
593.997
|
763.717
|
594.132
|
579.568
|
120.760
|
317.392
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.167
|
-0.320
|
-0.137
|
0.299
|
0.197
|
0.373
|
— |
0.506
|
— | — | — | — | — |
No JSON data available for plots.