Hg_chrom5_TN10mRNA_8965
Organism: Heterodera glycines Gene Locus: chr5:448861-450984 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.437 | 1.677 | 0.741 | 0.432 | 1.776 | 0.884 | 0.784 | 0.94 | 1.533 | 1.525 | 1.472 | 1.844 | 1.393 | 0.663 | 1.088 | 0.627 | 0.617 | 0.665 | 0.723 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8430
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.407
|
0.011
|
0.489
|
0.392
|
0.178
|
0.206
|
0.083
|
0.302
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003985
|
2.000
|
1.000
|
Hsc_gene_14481.t1
|
Hsc_gene_14481.t1
|
— |
P75524.1 Putative serine/threonine-protein kinase [Mycoplasmoides pneumoniae M129]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
XP_001424400
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.809|GO:0005575_0.793|GO:0110165_0.793|GO:0009987_0.763|GO:0005622_0.737|GO:0003674_0.722|GO:0043226_0.665|GO:0043229_0.637|GO:0016020_0.628|GO:0065007_0.611|GO:0050789_0.592|GO:0050794_0.575|GO:0003824_0.561|GO:0043227_0.541|GO:0050896_0.541|GO:0043231_0.536|GO:0016740_0.533|GO:0016772_0.512|GO:0016301_0.505
|
IPR000719+1-230_1-240_26-228+|IPR011009+1-232+
|
SM00220+1-230+
|
PF00069+26-228+Protein_kinase_domain
|
— |
PTHR44167+1-261+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;309-319
|
1.000
|
23-308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
36998.660
|
7.757
|
4.000
|
31.661
|
10.658
|
50.470
|
49.530
|
16.928
|
14.734
|
38.871
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
200.774
|
1.369
|
38.672
|
100.488
|
23.185
|
6.000
|
9.316
|
4.928
|
501.700
|
433.128
|
462.516
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.584
|
6.053
|
1.486
|
-2.149
|
-1.934
|
— | — | — | — | — |
-4.141
|
— | — |
No JSON data available for plots.