Hg_chrom5_TN10mRNA_8966
Organism: Heterodera glycines Gene Locus: chr5:451817-454666 Feature type: polypeptideProtein Sequence
Length: 384
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.545 | 1.332 | 0.994 | 0.18 | 1.78 | 0.935 | 0.465 | 0.521 | 1.273 | 0.598 | 3.038 | 0.766 | 0.579 | 0.25 | 1.169 | 2.046 | 0.768 | 0.237 | 0.801 | 0.613 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8431
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-Not_Clustered
|
0.696
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
PKREEKKKRRKRKRSH,KKEKSKTKRKKKNGRKRKH,KRKKKNGRKRKHKQKTKKE,KRKHKQKTKKESAVEKKEK,RKHKQKTKKESAVEKKEKR
|
— | — | — | — |
1-18
|
0.887
|
0.999
|
0.000
|
0.000
|
0.801
|
0.045
|
0.004
|
0.503
|
0.027
|
0.021
|
0.143
|
0.044
|
0.120
|
0.457
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003984
|
2.000
|
1.000
|
Hsc_gene_14482.t1
|
Hsc_gene_14482.t1
|
— | — | — |
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003677+57-153+
|
— |
PF02520+57-153+SXP/RAL-2_family_protein_Ani_s_5-like,_metal-binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
168-384
|
1.000
|
1-167
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.554
|
44214.720
|
10.553
|
39.000
|
42.969
|
6.250
|
71.354
|
28.646
|
26.823
|
16.146
|
42.188
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
448.179
|
3.795
|
46.436
|
59.915
|
20.956
|
5.394
|
2.123
|
2.225
|
1454.656
|
816.973
|
1090.266
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.375
|
3.836
|
0.479
|
-1.545
|
-1.945
|
— | — | — | — |
-4.475
|
-5.158
|
— | — |