Hg_chrom5_TN10mRNA_8972
Organism: Heterodera glycines Gene Locus: chr5:484984-490532 Feature type: polypeptideProtein Sequence
Length: 936
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 1.491 | 1.03 | 0.368 | 1.496 | 1.123 | 0.369 | 1.549 | 1.994 | 1.198 | 1.344 | 1.131 | 2.137 | 0.431 | 0.785 | 1.19 | 0.578 | 0.518 | 0.986 | 1.037 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8437
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
nucleus
|
nucleus
|
PMEKRRS,KRRSIYLKSFTREKIK,RKIIHAKLNSVEMNKRQQK,KKPYLPFFGIESFAEKREK
|
— | — | — | — |
1-26
|
0.951
|
1.000
|
0.000
|
0.000
|
0.554
|
0.267
|
0.011
|
0.438
|
0.139
|
0.260
|
0.074
|
0.047
|
0.119
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003980
|
2.000
|
1.000
|
Hsc_gene_14494.t1
|
— | — | — |
KAI3416513.1 hypothetical protein GPALN_006053 [Globodera pallida]
|
XP_047338935
|
0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006668+220-305+|IPR038076+210-293+
|
— |
PF03448+220-305+MgtE_intracellular_N_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-936
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.511
|
110001.160
|
6.322
|
-3.500
|
30.449
|
15.598
|
53.098
|
46.902
|
15.812
|
14.637
|
38.568
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
78.411
|
8.726
|
20.275
|
498.282
|
24.146
|
5.773
|
2.430
|
7.959
|
159.340
|
10.695
|
74.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.987
|
5.699
|
4.727
|
-4.397
|
-2.050
|
— | — |
-1.576
|
— | — | — | — | — |