Hg_chrom5_TN10mRNA_8979
Organism: Heterodera glycines Gene Locus: chr5:557140-569521 Feature type: polypeptideProtein Sequence
Length: 2,361
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.611 | 1.546 | 0.916 | 0.438 | 1.906 | 1.195 | 0.519 | 1.017 | 1.591 | 1.242 | 1.944 | 1.894 | 1.424 | 0.318 | 0.899 | 0.726 | 0.639 | 0.449 | 0.88 | 0.772 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8444
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.853
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRK,KKKKK,KKRKK,QKKKRK,KKGDEKPIQIGKMREK,KKRKEVYKKESEKQKKN,RKIGNIIKMLKQSKDYRR,RKKRDKRIKAALDKIKKM,PRKKRDKRIKAALDKIKK,KKAKMKSESNIAYLLRKNR,KKEKEDKTEKGGEEDGKRR,KKEKGGGEDKEEEMKKEAK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.526
|
0.158
|
0.004
|
0.620
|
0.095
|
0.141
|
0.107
|
0.012
|
0.135
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000410
|
4.000
|
4.000
|
Hsc_gene_15060.t1;Hsc_gene_15060.t2;Hsc_gene_25094.t1;Hsc_gene_25095.t1
|
— | — | — |
KAI3420075.1 polynucleotide adenylyltransferase [Globodera pallida]
|
HLP88613
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:1990817
|
GO:0005575_0.772|GO:0110165_0.772|GO:0005622_0.766|GO:0043226_0.717|GO:0043229_0.703|GO:0016020_0.689|GO:0043227_0.643|GO:0008150_0.606|GO:0043231_0.591|GO:0003674_0.546|GO:0005634_0.540|GO:0009987_0.512
|
IPR007012+2067-2202+|IPR043519+1855-2003_1856-2021+
|
— |
PF04928+2067-2202+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1945-2296+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
611-785;1376-1585
|
3.000
|
1-610;786-1375;1586-2361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.589
|
277111.810
|
8.482
|
42.000
|
35.748
|
10.928
|
56.036
|
43.964
|
19.271
|
16.476
|
36.171
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
green
|
4411.393
|
80.427
|
86.462
|
468.072
|
207.143
|
48.541
|
20.451
|
14.002
|
2227.300
|
17282.458
|
10830.247
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.405
|
2.549
|
-1.206
|
-2.080
|
-1.240
|
-1.901
|
— |
-3.059
|
-2.094
|
-5.952
|
— | — |
No JSON data available for plots.