Hg_chrom5_TN10mRNA_8982
Organism: Heterodera glycines Gene Locus: chr5:577031-577472 Feature type: polypeptideProtein Sequence
Length: 100
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.116 | 1.395 | 2.364 | 4.483 | 0.833 | 0.513 | 0.476 | 1.0 | 1.333 | 0.811 | 0.606 | 1.765 | 1.389 | 2.308 | 1.224 | 0.714 | 0.492 | 0.606 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8447
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_8982
|
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-21
|
0.999
|
1.000
|
0.000
|
0.000
|
0.326
|
0.269
|
0.038
|
0.491
|
0.034
|
0.039
|
0.013
|
0.020
|
0.133
|
0.930
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009095
|
1.000
|
1.000
|
Hsc_gene_10529.t1
|
Hsc_gene_10529.t1;Hsc_gene_10529.t2
|
— | — |
NP_504416.1 TIL domain-containing protein [Caenorhabditis elegans];CCD64159.1 TIL domain-containing protein [Caenorhabditis elegans]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR036084+41-100+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-100
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.688
|
11252.830
|
4.277
|
-7.000
|
30.000
|
7.000
|
46.000
|
54.000
|
12.000
|
18.000
|
61.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
437.840
|
1832.944
|
236.967
|
44.088
|
120.546
|
875.736
|
87.962
|
247.410
|
53.911
|
582.997
|
356.246
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.181
|
-5.516
|
-2.318
|
1.422
|
2.874
|
-3.309
|
-1.928
|
-1.353
|
— | — | — | — | — |