Hg_chrom5_TN10mRNA_8983
Organism: Heterodera glycines Gene Locus: chr5:578579-582430 Feature type: polypeptideProtein Sequence
Length: 347
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.704 | 1.139 | 0.734 | 1.192 | 1.009 | 0.887 | 0.858 | 2.45 | 1.409 | 1.83 | 0.917 | 1.526 | 1.921 | 0.776 | 0.706 | 1.029 | 0.472 | 0.611 | 0.222 | 0.763 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8448
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_8983
|
10-Pre_planta
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.145
|
0.623
|
0.039
|
0.243
|
0.463
|
0.447
|
0.386
|
0.075
|
0.166
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009096
|
1.000
|
1.000
|
Hsc_gene_10528.t1
|
Hsc_gene_10528.t1;Hsc_gene_10528.t2;Hsc_gene_10528.t3
|
— |
Q9TYP1.2 Sterol 4-C-methyltransferase strm-1 [Caenorhabditis elegans]
|
KAI6235955.1 SAM-MT-ERG6-SMT domain-containing protein [Aphelenchoides besseyi]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008168|GO:0008757
|
GO:0008150_0.914|GO:0003674_0.729|GO:0005575_0.626|GO:0110165_0.613|GO:0003824_0.587|GO:0009987_0.566|GO:0016020_0.550|GO:0016740_0.544|GO:0008152_0.536|GO:0005622_0.520|GO:0008168_0.503|GO:0008757_0.503|GO:0009058_0.503|GO:0016741_0.503
|
IPR013216+115-213+|IPR029063+82-280_90-282+|IPR030384+46-347+|IPR050447+34-346+
|
— |
PF08241+115-213+Methyltransferase_domain
|
— |
PTHR44068+34-346+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-347
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.696
|
38983.200
|
7.190
|
6.500
|
24.496
|
14.697
|
42.939
|
57.061
|
14.409
|
10.086
|
43.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
204.598
|
679.673
|
293.303
|
180.540
|
129.030
|
155.976
|
80.644
|
236.920
|
60.193
|
191.438
|
135.190
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.442
|
-2.050
|
-0.591
|
-0.517
|
0.288
|
-0.946
|
0.503
|
-1.419
|
— | — | — | — | — |
No JSON data available for plots.