Hg_chrom5_TN10mRNA_8986
Organism: Heterodera glycines Gene Locus: chr5:589455-591423 Feature type: polypeptideProtein Sequence
Length: 290
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.802 | 0.962 | 0.313 | 1.07 | 0.92 | 1.857 | 2.586 | 0.862 | 0.307 | 0.326 | 0.366 | 0.811 | 0.287 | 3.316 | 0.985 | 0.64 | 0.622 | 0.784 | 0.265 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8451
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_8986
|
21-Not_Clustered
|
0.752
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
14-36
|
0.994
|
25-84
|
0.915
|
— | — |
0.000
|
— | — |
0.046
|
0.064
|
0.012
|
0.100
|
0.468
|
0.218
|
0.253
|
0.004
|
0.685
|
0.219
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009099
|
1.000
|
1.000
|
Hsc_gene_10524.t1
|
Hsc_gene_10524.t1
|
— |
P20630.1 Cuticle collagen 12 [Caenorhabditis elegans]
|
KAH7694787.1 Nematode cuticle collagen, partial [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.934|GO:0032501_0.867|GO:0032502_0.864|GO:0048856_0.864|GO:0007275_0.837|GO:0005575_0.754|GO:0110165_0.752|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.628|GO:0071944_0.628|GO:0031012_0.545|GO:0062023_0.545
|
IPR002486+16-68_19-68+|IPR008160+152-206_216-274+|IPR050632+21-288+
|
SM01088+16-68+
|
PF01391+152-206_216-274+Collagen_triple_helix_repeat_(20_copies)|PF01484+19-68+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+21-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3;90-290
|
1.000
|
4-89
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.920
|
29048.960
|
7.222
|
2.500
|
16.207
|
6.552
|
35.862
|
64.138
|
8.966
|
7.241
|
68.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkred
|
20816.161
|
16.944
|
22.570
|
94426.206
|
63052.529
|
1396.019
|
16940.170
|
5787.725
|
275.883
|
22747.980
|
13117.082
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
12.304
|
12.140
|
-0.614
|
-5.481
|
3.603
|
1.924
|
1.695
|
-6.495
|
8.585
|
— | — | — |
No JSON data available for plots.