SCN Proteipedia

Hg_chrom5_TN10mRNA_8991

Organism: Heterodera glycines Gene Locus: chr5:606207-608582 Feature type: polypeptide

Protein Sequence

Length: 400

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.163	1.163	0.591	0.259	1.292	2.051	0.446	1.75	1.0	1.182	0.53	1.324	1.667	1.01	1.173	1.107	1.025	0.947	1.154	0.074	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8456	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	Hg_chrom5_TN10mRNA_8991	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RRHLPQIRLGTKIGKLLRR	—	—	—	—	—	—	0.000	—	—	0.121	0.152	0.056	0.275	0.201	0.358	0.251	0.042	0.664	0.093

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009104	1.000	1.000	Hsc_gene_10518.t1	Hsc_gene_10518.t1;Hsc_gene_10518.t2;Hsc_gene_10518.t3;Hsc_gene_10518.t4	—	—	KAI3422587.1 hypothetical protein GPALN_013087 [Globodera pallida]	No	-0.120

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.966\|GO:0005575_0.955\|GO:0110165_0.955\|GO:0009987_0.941\|GO:0016020_0.928\|GO:0051179_0.911\|GO:0005886_0.910\|GO:0071944_0.910\|GO:0006810_0.909\|GO:0051234_0.909\|GO:0005622_0.852\|GO:0043226_0.823\|GO:0043229_0.794\|GO:0016043_0.788\|GO:0071840_0.788\|GO:0043227_0.784\|GO:0051641_0.768\|GO:0006996_0.735\|GO:0051649_0.734\|GO:0033036_0.724\|GO:0070727_0.721\|GO:0008104_0.720\|GO:0016192_0.710\|GO:0046907_0.705\|GO:0044085_0.702\|GO:0030030_0.697\|GO:0022607_0.696\|GO:0120036_0.696\|GO:0098590_0.695\|GO:0007010_0.689\|GO:0048193_0.687\|GO:0033365_0.685\|GO:0007017_0.683\|GO:0007018_0.682\|GO:0030031_0.682\|GO:0051640_0.682\|GO:0120031_0.682\|GO:0051656_0.681\|GO:0070925_0.680\|GO:0000226_0.679\|GO:0051648_0.679\|GO:0051650_0.678\|GO:0010970_0.677\|GO:0030705_0.677\|GO:0099111_0.677\|GO:0001578_0.676\|GO:0005929_0.676\|GO:0006903_0.676\|GO:0030990_0.676\|GO:0031503_0.676\|GO:0032991_0.676\|GO:0035082_0.676\|GO:0035735_0.676\|GO:0042073_0.676\|GO:0042995_0.676\|GO:0044782_0.676\|GO:0048199_0.676\|GO:0060271_0.676\|GO:0061512_0.676\|GO:0097712_0.676\|GO:0120025_0.676\|GO:1905349_0.676\|GO:1905515_0.670\|GO:0043228_0.589\|GO:0043232_0.589\|GO:0005856_0.585\|GO:0015630_0.560\|GO:0005815_0.553\|GO:0035869_0.540\|GO:0036064_0.540	IPR029409+34-393_169-383+	—	PF15383+169-383+Transmembrane_protein_237	—	PTHR28388+34-393+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-177	1.000	178-400	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.558	44949.770	6.504	0.000	23.750	11.250	50.750	49.250	12.750	11.000	48.250

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	47.716	180.420	125.586	42.135	13.893	19.244	17.635	96.729	23.621	5.176	13.081

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.752	-2.236	-1.465	-1.635	—	—	2.230	-2.318	—	—	—	—	—

No JSON data available for plots.

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