Hg_chrom5_TN10mRNA_8994
Organism: Heterodera glycines Gene Locus: chr5:611657-613432 Feature type: polypeptideProtein Sequence
Length: 321
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.797 | 1.521 | 0.34 | 0.967 | 0.467 | 0.879 | 0.742 | 1.09 | 3.392 | 1.347 | 0.614 | 0.733 | 2.423 | 0.719 | 0.699 | 0.89 | 1.072 | 0.661 | 0.959 | 0.733 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8458
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_8994
|
18-ppJ2_pJ2_J3_J4_Male
|
0.964
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
46-66
|
0.983
|
— | — | — | — |
0.000
|
— | — |
0.113
|
0.048
|
0.033
|
0.074
|
0.430
|
0.139
|
0.147
|
0.019
|
0.883
|
0.075
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001894
|
3.000
|
1.000
|
Hsc_gene_10515.t1
|
Hsc_gene_10515.t1
|
— | — |
KAF7632662.1 G_PROTEIN_RECEP_F1_2 domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+31-294+|IPR019424+32-292+|IPR047130+25-298+
|
SM01381+31-294+
|
PF10320+32-292+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+25-298+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
312-321
|
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
35933.450
|
9.075
|
12.500
|
14.330
|
14.642
|
37.072
|
62.928
|
9.657
|
4.673
|
45.171
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
red
|
125.547
|
5.673
|
9.675
|
13.150
|
6.635
|
24.481
|
2.433
|
18.267
|
2.410
|
517.341
|
296.656
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.077
|
— |
-1.021
|
1.900
|
-3.318
|
— |
-2.764
|
— | — | — | — | — |
No JSON data available for plots.