SCN Proteipedia

Hg_chrom5_TN10mRNA_8998

Organism: Heterodera glycines Gene Locus: chr5:623655-628034 Feature type: polypeptide

Protein Sequence

Length: 523 (Signal peptide: 1-19)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.8	1.112	1.008	0.527	1.243	1.226	0.66	1.243	1.232	1.111	1.159	2.362	1.487	0.882	0.937	0.683	0.815	1.101	0.441	1.012	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8462	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	Yes	—	—	Hsc_gene_1683	—	Hg_chrom5_TN10mRNA_8998	21-pJ2_J3	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	1-19	0.983	1.000	0.000	0.000	0.463	0.257	0.059	0.703	0.140	0.140	0.119	0.011	0.149	0.266

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000868	5.000	1.000	Hsc_gene_1683.t1	Hsc_gene_1683.t1	—	O22494.1 Glutathione synthetase, chloroplastic [Solanum lycopersicum]	5OEU_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEU_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-closed) [Globodera pallida];5OEV_A Chain A, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_B Chain B, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_C Chain C, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida];5OEV_D Chain D, Glutathione synthetase-like effector 22 (Gpa-GSS22-apo) [Globodera pallida]	No	-0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004363\|GO:0005524\|GO:0006750\|GO:0016874	GO:0008150_0.942\|GO:0003674_0.874\|GO:0008152_0.802\|GO:0009987_0.759\|GO:0005575_0.687\|GO:0050896_0.687\|GO:0110165_0.687\|GO:0044237_0.656\|GO:0003824_0.646\|GO:0009058_0.645\|GO:0044249_0.623\|GO:0006790_0.560\|GO:0043603_0.559\|GO:0006518_0.555\|GO:0006575_0.555\|GO:0006749_0.555\|GO:0006750_0.555\|GO:0019184_0.555\|GO:0042398_0.555\|GO:0043043_0.555\|GO:0043604_0.555\|GO:0044272_0.555\|GO:0016874_0.544\|GO:0004363_0.539\|GO:0016879_0.539\|GO:0016881_0.539\|GO:1904091_0.539\|GO:0005622_0.522\|GO:0042221_0.511	IPR005615+24-523_38-523_50-522+\|IPR014042+107-381+\|IPR014049+50-463+\|IPR014709+382-451+\|IPR037013+223-346+	—	PF03917+50-522+Eukaryotic_glutathione_synthase,_ATP_binding_domain	—	PTHR11130+38-523+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-523	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.551	59566.500	6.816	2.500	27.725	11.855	47.036	52.964	14.723	13.002	45.889

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	pink	236.020	1.215	7.506	395.795	294.238	40.004	90.447	24.666	144.060	604.340	407.077

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.382	8.205	5.829	-0.459	-2.865	1.190	—	2.025	—	—	—	—	—

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