Hg_chrom5_TN10mRNA_8999
Organism: Heterodera glycines Gene Locus: chr5:630614-633023 Feature type: polypeptideProtein Sequence
Length: 221
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 1.684 | 0.74 | 1.716 | 0.679 | 1.392 | 0.916 | 0.905 | 0.804 | 1.101 | 0.686 | 2.396 | 0.503 | 0.348 | 0.554 | 1.487 | 1.113 | 0.686 | 2.436 | 1.065 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8463
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_1682
|
— |
Hg_chrom5_TN10mRNA_8999
|
30-pJ2
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|extracellular
|
— | — | — | — | — | — |
1-27
|
0.925
|
1.000
|
0.000
|
0.000
|
0.192
|
0.242
|
0.057
|
0.513
|
0.292
|
0.059
|
0.077
|
0.050
|
0.306
|
0.830
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003986
|
2.000
|
1.000
|
Hsc_gene_1682.t1
|
— | — |
Q16937.1 Ancylostoma secreted protein [Ancylostoma caninum]
|
AEL16453.1 VAP1 protein [Globodera rostochiensis];AHW98763.1 VAP1 protein [Globodera rostochiensis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.795|GO:0110165_0.787|GO:0008150_0.753
|
IPR001283+36-190_69-87_120-133_148-164_177-190+|IPR002413+27-43_69-87_118-133_147-166+|IPR014044+31-190_37-182+|IPR035940+20-197_24-221+
|
SM00198+31-190+
|
PF00188+37-182+Cysteine-rich_secretory_protein_family
|
— |
PTHR10334+36-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-221
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.790
|
24163.230
|
6.450
|
0.000
|
17.195
|
10.407
|
47.059
|
52.941
|
9.050
|
8.145
|
57.014
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
785.234
|
11.987
|
582.952
|
1117.176
|
492.163
|
59.044
|
100.129
|
241.221
|
3139.384
|
104.108
|
1404.941
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.382
|
6.407
|
1.041
|
-1.215
|
-3.044
|
0.773
|
1.943
|
-1.132
|
4.815
|
— | — | — | — |