Hg_chrom5_TN10mRNA_9004
Organism: Heterodera glycines Gene Locus: chr5:661316-667275 Feature type: polypeptideProtein Sequence
Length: 698
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.033 | 1.433 | 0.886 | 1.087 | 0.645 | 0.661 | 0.563 | 1.648 | 1.051 | 1.955 | 0.63 | 1.517 | 1.433 | 0.909 | 1.667 | 1.023 | 0.869 | 0.543 | 0.992 | 0.337 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8468
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.497
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
mitochondria
|
KRWRIDRCVGMVRQKSR
|
45-92
|
0.773
|
— | — | — |
0.810
|
0.097
|
1.000
|
— |
0.172
|
0.064
|
0.013
|
0.270
|
0.358
|
0.379
|
0.267
|
0.180
|
0.708
|
0.137
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002153
|
2.000
|
2.000
|
Hsc_gene_1678.t1;Hsc_gene_1679.t1
|
Hsc_gene_1678.t1
|
— | — |
KAI1722261.1 leucine rich repeat domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
— |
IPR001611+249-298_311-370_336-357+|IPR003591+262-285_286-309_334-357_408-431+|IPR032675+18-437+|IPR050328+201-614+
|
SM00369+262-285_286-309_334-357_408-431+
|
PF13855+249-298_311-370+Leucine_rich_repeat
|
— |
PTHR24373+201-614+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
698-698
|
1.000
|
1-697
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.840
|
78545.070
|
9.593
|
36.500
|
24.355
|
10.888
|
45.559
|
54.441
|
15.616
|
8.739
|
48.567
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
blue
|
311.662
|
16.029
|
52.517
|
38.114
|
15.761
|
611.018
|
17.033
|
41.136
|
150.588
|
953.727
|
609.525
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.480
|
1.113
|
— |
-1.299
|
5.282
|
-5.155
|
-3.997
|
-1.130
|
— | — |
-5.774
|
— | — |