Hg_chrom5_TN10mRNA_9007
Organism: Heterodera glycines Gene Locus: chr5:675173-680114 Feature type: polypeptideProtein Sequence
Length: 307
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.985 | 0.758 | 0.77 | 1.236 | 1.412 | 1.169 | 0.62 | 1.792 | 1.375 | 0.924 | 1.431 | 2.491 | 1.448 | 0.814 | 0.665 | 0.838 | 1.015 | 0.592 | 0.251 | 0.862 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8471
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KRMNYTEDNLDEDTKKKIE
|
— | — | — | — | — | — |
0.000
|
— | — |
0.130
|
0.187
|
0.057
|
0.467
|
0.582
|
0.075
|
0.289
|
0.149
|
0.205
|
0.388
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002162
|
3.000
|
1.000
|
Hsc_gene_1675.t1
|
— | — | — |
KAI3410498.1 hypothetical protein GPALN_004599 [Globodera pallida];5OET_A Chain A, Glutathione synthetase-like effector 30 (Gpa-GSS30-apo) [Globodera pallida];5OET_B Chain B, Glutathione synthetase-like effector 30 (Gpa-GSS30-apo) [Globodera pallida]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0004363|GO:0005524|GO:0006508|GO:0006750|GO:0016874
|
— |
IPR005615+128-297+|IPR014042+245-280+|IPR014709+281-297+|IPR037013+234-244+|IPR037219+2-150+
|
— |
PF03917+128-297+Eukaryotic_glutathione_synthase,_ATP_binding_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
296-307
|
1.000
|
1-295
|
5oet_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.565
|
34670.940
|
7.393
|
5.500
|
28.990
|
12.052
|
48.860
|
51.140
|
16.287
|
12.704
|
44.951
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
45.064
|
7.734
|
6.870
|
4.354
|
12.444
|
8.980
|
8.826
|
10.559
|
8.707
|
168.214
|
99.854
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.484
|
— | — | — | — |
-4.412
|
— | — | — | — |
No JSON data available for plots.