Hg_chrom5_TN10mRNA_9009
Organism: Heterodera glycines Gene Locus: chr5:693247-694945 Feature type: polypeptideProtein Sequence
Length: 129
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 1.622 | 1.128 | 1.871 | 0.517 | 1.59 | 0.277 | 1.55 | 2.067 | 1.362 | 0.822 | 2.28 | 1.507 | 0.596 | 0.949 | 0.554 | 1.144 | 0.587 | 1.789 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8473
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.321
|
0.249
|
0.356
|
0.453
|
0.337
|
0.154
|
0.147
|
0.140
|
0.329
|
0.310
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_1641.t1
|
— |
Q8W571.3 RING-H2 finger protein ATL32 [Arabidopsis thaliana]
|
KAJ4757293.1 RING-H2 finger protein ATL4O [Rhynchospora pubera]
|
KAJ3686293
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.875|GO:0003674_0.702|GO:0003824_0.558|GO:0008152_0.556|GO:0016740_0.525|GO:0140096_0.522|GO:0044238_0.516|GO:0016746_0.513|GO:0043170_0.511|GO:0016755_0.508|GO:0019787_0.508|GO:0004842_0.506|GO:0005575_0.502
|
IPR001841+55-84_56-101_56-112+|IPR013083+49-114+|IPR053238+43-91+
|
SM00184+56-112+
|
PF17123+55-84+RING-like_zinc_finger
|
— |
PTHR14155+43-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-129
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
14797.280
|
7.583
|
3.000
|
22.481
|
10.853
|
46.512
|
53.488
|
13.178
|
9.302
|
46.512
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
5.378
|
1.431
|
0.758
|
18.993
|
6.466
|
1.493
|
0.202
|
1.118
|
3.598
|
9.405
|
6.916
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.588
|
4.800
|
-1.581
|
-2.099
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.