SCN Proteipedia

Hg_chrom5_TN10mRNA_9011

Organism: Heterodera glycines Gene Locus: chr5:706920-723701 Feature type: polypeptide

Protein Sequence

Length: 738

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.213	0.819	1.035	0.514	1.152	1.494	0.871	1.016	0.903	1.263	0.862	1.196	1.28	0.834	1.604	0.716	0.8	0.739	0.938	0.837	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8475	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Not_Clustered	0.905

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRQQRQQRHRRRRRHRRRQ,RQRRQRRQQRQQRHRRRRRHRRR	40-60	1.000	55-83	0.908	—	—	0.000	—	—	0.509	0.157	0.058	0.523	0.085	0.085	0.106	0.033	0.326	0.136

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009108	1.000	1.000	Hsc_gene_1644.t1	Hsc_gene_1644.t1	—	Q17941.2 Serine/threonine-protein kinase akt-1 [Caenorhabditis elegans]	KAH7730521.1 v-akt murine thymoma viral oncogene 3 (protein kinase Bgamma)-like protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.985\|GO:0009987_0.910\|GO:0065007_0.891\|GO:0050789_0.879\|GO:0003674_0.875\|GO:0003824_0.870\|GO:0016740_0.870\|GO:0016772_0.870\|GO:0016773_0.864\|GO:0004672_0.862\|GO:0016301_0.862\|GO:0140096_0.862\|GO:0005575_0.849\|GO:0050896_0.849\|GO:0050794_0.836\|GO:0110165_0.813\|GO:0004674_0.794\|GO:0051716_0.779\|GO:0005622_0.735\|GO:0007154_0.721\|GO:0023052_0.714\|GO:0048518_0.698\|GO:0032502_0.692\|GO:0007165_0.691\|GO:0048856_0.669\|GO:0008152_0.652\|GO:0071840_0.650\|GO:0032501_0.631\|GO:0048522_0.631\|GO:0016020_0.629\|GO:0042221_0.625\|GO:0016043_0.621\|GO:0044237_0.602\|GO:0005488_0.592\|GO:0043170_0.582\|GO:1901700_0.577\|GO:0007275_0.562\|GO:0051179_0.559\|GO:0044238_0.550\|GO:0019222_0.546\|GO:0031323_0.546\|GO:0006810_0.541\|GO:0051234_0.541\|GO:0048519_0.536\|GO:0009719_0.532\|GO:0032879_0.526\|GO:0071944_0.523\|GO:0048731_0.519\|GO:0051049_0.506\|GO:0070887_0.503\|GO:1901698_0.501	IPR000719+385-647_386-632+\|IPR000961+648-718_648-726+\|IPR001849+145-246_146-245_146-248+\|IPR008271+509-521+\|IPR011009+380-695+\|IPR011993+141-254+\|IPR017441+391-414+\|IPR017892+668-716+\|IPR039026+144-249+	SM00133+648-718+\|SM00220+385-647+\|SM00233+146-248+	PF00069+386-632+Protein_kinase_domain\|PF00169+146-245+PH_domain\|PF00433+668-716+Protein_kinase_C_terminal_domain	G3DSA:1.10.510.10:FF:000033+468-678+Non-specific_serine/threonine_protein_kinase\|G3DSA:2.30.29.30:FF:000404+142-255+Non-specific_serine/threonine_protein_kinase\|G3DSA:3.30.200.20:FF:001053+382-479+Non-specific_serine/threonine_protein_kinase	PTHR24351+352-718+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-136;668-738	1.000	137-667	6npz_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.689	82916.120	8.501	14.500	28.184	10.705	47.425	52.575	15.583	12.602	47.561

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	3342.188	4603.071	3987.203	1059.903	865.748	1338.302	905.299	3167.963	3864.138	5751.160	4942.436

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.436	-2.256	-1.803	-0.324	0.643	-0.554	1.138	-1.664	—	—	-2.319	—	—

No JSON data available for plots.

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