Hg_chrom5_TN10mRNA_9012
Organism: Heterodera glycines Gene Locus: chr5:734881-735291 Feature type: polypeptideProtein Sequence
Length: 74
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.1 | 1.257 | 0.246 | 1.864 | 0.225 | 2.772 | 0.483 | 1.351 | 0.601 | 0.913 | 1.229 | 2.385 | 2.628 | 0.52 | 1.655 | 0.965 | 0.222 | 1.229 | 0.0 | 0.397 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8476
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
Hgg-18|AF345801.1#tn8jg26334.t1
|
Hgg-18|AF3458011#tn8jg26334t1
|
Hsc_gene_1646
|
— | — |
9-Not_Clustered
|
0.567
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cell_membrane
|
— | — | — | — | — | — |
1-23
|
0.912
|
1.000
|
0.000
|
0.000
|
0.467
|
0.341
|
0.012
|
0.383
|
0.183
|
0.178
|
0.201
|
0.048
|
0.559
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009109
|
1.000
|
1.000
|
Hsc_gene_1646.t1
|
Hsc_gene_1646.t1
|
— | — |
AAL78229.1 SCN esophageal gland cell protein, partial [Heterodera glycines]
|
MDZ4870469
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-74
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
8510.030
|
11.067
|
11.000
|
21.622
|
13.514
|
45.946
|
54.054
|
18.919
|
2.703
|
44.595
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
80338.534
|
247.279
|
13796.106
|
4390.727
|
517.716
|
67.901
|
14.605
|
2741.529
|
453546.183
|
3155.501
|
196180.079
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.574
|
4.012
|
-1.544
|
-3.117
|
-2.917
|
-2.209
|
5.240
|
-7.416
|
7.070
|
-6.528
|
— | — | — |