Hg_chrom5_TN10mRNA_9014
Organism: Heterodera glycines Gene Locus: chr5:740969-742831 Feature type: polypeptideProtein Sequence
Length: 360
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.614 | 1.938 | 0.859 | 1.054 | 0.787 | 1.211 | 0.463 | 1.667 | 1.975 | 1.051 | 1.221 | 1.961 | 1.775 | 0.694 | 1.304 | 0.992 | 0.592 | 0.547 | 0.641 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8478
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
KRRKRSFRRRRRA,KKGFANSVYESIKRTYK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.388
|
0.091
|
0.039
|
0.448
|
0.319
|
0.325
|
0.425
|
0.039
|
0.215
|
0.279
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000312
|
4.000
|
5.000
|
Hsc_gene_15723.t1;Hsc_gene_1648.t1;Hsc_gene_1652.t1;Hsc_gene_1652.t2;Hsc_gene_8171.t1
|
Hsc_gene_1648.t1
|
— |
Q8W571.3 RING-H2 finger protein ATL32 [Arabidopsis thaliana]
|
KAJ6682220.1 RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED [Salix koriyanagi]
|
MCO5614127
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.930|GO:0003674_0.681|GO:0009987_0.665|GO:0005575_0.590|GO:0110165_0.590|GO:0008152_0.529|GO:0050896_0.525|GO:0016020_0.523|GO:0043170_0.510|GO:0044238_0.508
|
IPR001841+280-324_281-323_281-324+|IPR011016+280-324+|IPR013083+276-328+|IPR051826+139-325+
|
SM00184+281-323+|SM00744+280-324+
|
PF13639+280-324+Ring_finger_domain
|
— |
PTHR22765+139-325+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-360
|
2ect_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
41828.350
|
9.872
|
24.000
|
27.222
|
13.056
|
50.833
|
49.167
|
17.778
|
9.444
|
43.056
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
112.436
|
0.074
|
3.368
|
20.537
|
42.279
|
12.489
|
4.658
|
2.865
|
8.578
|
453.125
|
262.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.132
|
7.827
|
2.729
|
1.007
|
-1.743
|
-1.417
|
-2.231
|
— |
-5.838
|
— | — | — | — |
No JSON data available for plots.