Hg_chrom5_TN10mRNA_9017
Organism: Heterodera glycines Gene Locus: chr5:758390-760953 Feature type: polypeptideProtein Sequence
Length: 344
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.608 | 2.163 | 0.634 | 1.002 | 0.921 | 1.044 | 0.415 | 2.035 | 2.196 | 1.218 | 1.057 | 1.026 | 1.857 | 0.727 | 1.127 | 0.872 | 0.572 | 0.793 | 1.118 | 0.598 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8481
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— |
KRRKRSFRRHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.249
|
0.064
|
0.039
|
0.415
|
0.436
|
0.541
|
0.405
|
0.050
|
0.360
|
0.238
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000312
|
4.000
|
5.000
|
Hsc_gene_15723.t1;Hsc_gene_1648.t1;Hsc_gene_1652.t1;Hsc_gene_1652.t2;Hsc_gene_8171.t1
|
— | — |
Q8W571.3 RING-H2 finger protein ATL32 [Arabidopsis thaliana]
|
KAJ6682220.1 RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED [Salix koriyanagi]
|
XP_022768384
|
0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008270
|
GO:0008150_0.906|GO:0003674_0.711|GO:0009987_0.638|GO:0005575_0.571|GO:0110165_0.571|GO:0003824_0.525|GO:0016020_0.512
|
IPR001841+263-307_264-306_264-307+|IPR011016+263-307+|IPR013083+259-311+|IPR052788+196-321+
|
SM00184+264-306+|SM00744+263-307+
|
PF13639+263-307+Ring_finger_domain
|
— |
PTHR45798+196-321+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-344
|
2ect_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
39946.250
|
9.408
|
19.000
|
25.581
|
14.244
|
48.547
|
51.453
|
16.570
|
9.012
|
43.023
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
77.634
|
0.303
|
9.602
|
67.062
|
67.335
|
17.756
|
8.203
|
3.006
|
52.840
|
235.045
|
156.957
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.747
|
7.640
|
2.915
|
— |
-1.910
|
-1.110
|
-2.663
|
1.578
|
— | — | — | — |
-8.088
|
No JSON data available for plots.