Hg_chrom5_TN10mRNA_9020
Organism: Heterodera glycines Gene Locus: chr5:771450-774167 Feature type: polypeptideProtein Sequence
Length: 430
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.487 | 1.731 | 0.93 | 0.642 | 1.24 | 1.491 | 0.554 | 0.698 | 1.705 | 1.603 | 1.48 | 0.547 | 1.357 | 0.581 | 0.712 | 0.997 | 0.496 | 0.916 | 1.252 | 0.821 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8484
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-22
|
0.986
|
0.903
|
0.000
|
0.000
|
0.582
|
0.343
|
0.028
|
0.675
|
0.199
|
0.119
|
0.082
|
0.024
|
0.129
|
0.094
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002163
|
1.000
|
3.000
|
Hsc_gene_1658.t1;Hsc_gene_1659.t1;Hsc_gene_1670.t1
|
— | — | — |
KAI6171681.1 Protein UBASH3A-like protein [Aphelenchoides besseyi]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013078+269-353_270-358_270-359+|IPR029033+268-429_270-387+|IPR051710+269-370+
|
SM00855+269-353+
|
PF00300+270-359+Histidine_phosphatase_superfamily_(branch_1)
|
— |
PTHR16469+269-370+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-430
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.734
|
49479.940
|
8.074
|
6.000
|
27.209
|
10.698
|
50.465
|
49.535
|
14.651
|
12.558
|
42.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
465.587
|
1.232
|
106.070
|
1570.645
|
85.081
|
2.286
|
6.891
|
4.454
|
1364.599
|
347.249
|
783.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.209
|
10.188
|
3.997
|
-4.239
|
-5.200
|
— | — | — | — | — | — | — | — |