Hg_chrom5_TN10mRNA_9021
Organism: Heterodera glycines Gene Locus: chr5:775617-779031 Feature type: polypeptideProtein Sequence
Length: 407
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.943 | 0.686 | 0.357 | 1.017 | 0.246 | 1.197 | 0.322 | 0.86 | 1.474 | 1.561 | 0.372 | 1.301 | 3.071 | 1.181 | 0.953 | 1.334 | 0.886 | 1.266 | 1.512 | 1.084 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8485
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.700
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
34-81
|
0.892
|
1-37
|
0.974
|
— | — |
0.000
|
— | — |
0.094
|
0.083
|
0.006
|
0.065
|
0.340
|
0.190
|
0.190
|
0.095
|
0.802
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009113
|
1.000
|
1.000
|
Hsc_gene_1661.t1
|
Hsc_gene_1660.t1;Hsc_gene_1661.t1;Hsc_gene_1669.t1
|
— | — |
KAF7629191.1 7TM_GPCR_Srx domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR019430+56-201+
|
— |
PF10328+56-201+Serpentine_type_7TM_GPCR_chemoreceptor_Srx
|
— |
PTHR22718+47-357+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-407
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.794
|
46383.810
|
9.455
|
18.500
|
12.285
|
18.428
|
34.644
|
65.356
|
8.845
|
3.440
|
47.912
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
21.881
|
4.726
|
25.701
|
6.630
|
4.924
|
10.992
|
31.013
|
7.036
|
30.194
|
38.949
|
35.197
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.215
|
— |
-1.844
|
— |
1.177
|
1.503
|
— |
2.281
|
— | — | — | — | — |
No JSON data available for plots.