Hg_chrom5_TN10mRNA_9025
Organism: Heterodera glycines Gene Locus: chr5:788183-792864 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.798 | 1.007 | 0.985 | 0.685 | 1.384 | 1.065 | 0.537 | 0.812 | 1.604 | 1.146 | 1.067 | 1.593 | 2.657 | 0.798 | 1.216 | 0.542 | 0.829 | 0.848 | 0.417 | 0.796 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8489
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.788
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KRVRNRVTPAFTTGKLKKL
|
8-54
|
0.863
|
— | — | — | — |
0.000
|
— | — |
0.121
|
0.400
|
0.096
|
0.102
|
0.889
|
0.099
|
0.108
|
0.004
|
0.206
|
0.051
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001837
|
3.000
|
1.000
|
Hsc_gene_1664.t1
|
Hsc_gene_1664.t1;Hsc_gene_1665.t1
|
— |
Q64459.1 Cytochrome P450 3A11 [Mus musculus]
|
KAI3412148.1 Cytochrome P450 3A4 [Globodera pallida]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004497|GO:0005506|GO:0016705|GO:0020037
|
GO:0008150_0.877|GO:0050896_0.589|GO:0003674_0.585|GO:0009987_0.556|GO:0005575_0.518|GO:0110165_0.512
|
IPR001128+56-548_362-379_415-426_490-499_499-510+|IPR002401+351-368_371-397_414-432_454-478_489-499_499-522+|IPR017972+492-501+|IPR036396+39-553_55-551+|IPR050705+35-552+
|
— |
PF00067+56-548+Cytochrome_P450
|
G3DSA:1.10.630.10:FF:000042+39-553+Cytochrome_P450
|
PTHR24302+35-552+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.552
|
64330.330
|
6.589
|
0.500
|
28.339
|
14.440
|
45.668
|
54.332
|
14.621
|
13.718
|
41.697
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
985.074
|
1074.591
|
2892.246
|
530.408
|
536.498
|
327.984
|
389.537
|
2136.121
|
47.432
|
1316.356
|
772.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.199
|
-1.156
|
-2.339
|
— |
-0.696
|
0.257
|
2.611
|
-2.320
|
-4.928
|
3.679
|
— | — | — |
No JSON data available for plots.