Hg_chrom5_TN10mRNA_9029
Organism: Heterodera glycines Gene Locus: chr5:803022-820744 Feature type: polypeptideProtein Sequence
Length: 1,889
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.671 | 1.637 | 1.088 | 0.438 | 1.518 | 1.086 | 0.391 | 1.059 | 1.565 | 1.202 | 1.676 | 1.931 | 1.426 | 0.57 | 0.972 | 0.809 | 0.764 | 0.513 | 1.385 | 0.747 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8493
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.430
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KKNKVEKPKHKKEKP,KKSKSDSNQKVKKNKV,KKKEEKKAKTLKKRNKN,KRQMIDANLKIELRSKRL,ETKKKEEKKAKTLKKRNK,KKDAKDGTKSSDRRKKGDR
|
— | — | — | — | — | — |
0.252
|
— | — |
0.517
|
0.144
|
0.007
|
0.618
|
0.091
|
0.088
|
0.119
|
0.015
|
0.126
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009117
|
1.000
|
1.000
|
Hsc_gene_1671.t1
|
— | — | — |
NP_496524.1 Poly(A) polymerase [Caenorhabditis elegans];CAA90398.2 Poly(A) polymerase [Caenorhabditis elegans]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.756|GO:0110165_0.756|GO:0005622_0.714|GO:0016020_0.674|GO:0043226_0.651|GO:0043229_0.634|GO:0008150_0.621|GO:0043227_0.589|GO:0043231_0.562|GO:0003674_0.553|GO:0009987_0.521
|
IPR007012+1570-1721+|IPR011068+1734-1822+|IPR043519+1341-1477_1372-1474+
|
— |
PF04928+1570-1721+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1357-1876+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
767-1001;1091-1157
|
3.000
|
1-766;1002-1090;1158-1889
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
221380.580
|
8.463
|
34.000
|
33.033
|
11.593
|
54.632
|
45.368
|
17.946
|
15.087
|
40.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
green
|
956.579
|
16.436
|
141.166
|
152.792
|
195.541
|
1583.297
|
147.732
|
162.588
|
2144.975
|
1676.472
|
1877.259
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.876
|
3.083
|
— |
0.325
|
3.030
|
-3.409
|
-3.396
|
— | — |
-3.638
|
— | — | — |
No JSON data available for plots.