Hg_chrom5_TN10mRNA_9032
Organism: Heterodera glycines Gene Locus: chr5:828370-834698 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.525 | 1.805 | 1.017 | 0.747 | 0.782 | 0.648 | 0.731 | 1.534 | 1.805 | 1.244 | 0.93 | 0.743 | 1.855 | 1.041 | 1.068 | 0.748 | 1.006 | 0.848 | 1.25 | 0.849 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8496
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.869
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
5-28
|
0.838
|
— | — | — | — |
0.000
|
— | — |
0.552
|
0.187
|
0.041
|
0.555
|
0.244
|
0.108
|
0.068
|
0.040
|
0.285
|
0.198
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003995
|
2.000
|
1.000
|
Hsc_gene_1674.t1
|
Hsc_gene_1674.t1
|
— |
Q4Z8K6.1 Ran-binding proteins 9/10 homolog [Drosophila melanogaster]
|
KAI3415278.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.744|GO:0005575_0.683|GO:0110165_0.682|GO:0005622_0.634|GO:0005737_0.585|GO:0009987_0.546
|
IPR001870+352-540+|IPR003877+416-539_420-537+|IPR013320+365-540+|IPR043136+350-550+|IPR044736+404-536+|IPR050618+357-537+
|
SM00449+416-539+
|
PF00622+420-537+SPRY_domain
|
— |
PTHR12864+357-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-554
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
63279.590
|
8.348
|
14.500
|
24.729
|
14.260
|
46.390
|
53.610
|
14.440
|
10.289
|
48.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
midnightblue
|
455.445
|
222.493
|
574.040
|
447.630
|
352.158
|
391.733
|
428.853
|
1225.910
|
281.532
|
415.369
|
358.010
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.138
|
0.871
|
-0.250
|
-0.379
|
0.169
|
— |
1.546
|
-1.375
|
— | — | — | — | — |
No JSON data available for plots.