Hg_chrom5_TN10mRNA_9035
Organism: Heterodera glycines Gene Locus: chr5:841180-842272 Feature type: polypeptideProtein Sequence
Length: 171
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.952 | 1.904 | 1.382 | 1.613 | 1.559 | 2.249 | 0.487 | 2.339 | 2.209 | 0.869 | 0.177 | 2.408 | 1.137 | 0.45 | 0.358 | 1.003 | 0.479 | 0.62 | 0.45 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8498
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Migratory
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-18
|
0.969
|
0.507
|
0.000
|
0.000
|
0.394
|
0.419
|
0.008
|
0.735
|
0.490
|
0.184
|
0.254
|
0.059
|
0.084
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009120
|
1.000
|
1.000
|
Hsc_gene_1641.t1
|
Hsc_gene_1637.t1
|
— | — |
XP_039028419.1 E3 ubiquitin-protein ligase SIRP1-like [Hibiscus syriacus];KAE8678824.1 multi-copper oxidase type 1 family protein [Hibiscus syriacus]
|
OMO55338
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.921|GO:0003674_0.758|GO:0008152_0.624|GO:0043170_0.618|GO:0003824_0.612|GO:0044238_0.608|GO:0140096_0.603|GO:0016740_0.589|GO:0019538_0.587|GO:0016746_0.581|GO:0016755_0.581|GO:0019787_0.581|GO:0004842_0.577|GO:0005575_0.531|GO:0036211_0.525|GO:0043412_0.525|GO:0009987_0.519|GO:0110165_0.519|GO:0043687_0.501|GO:0070647_0.501
|
IPR001841+62-106_63-105_63-106+|IPR013083+26-111+
|
SM00184+63-105+
|
PF13639+62-106+Ring_finger_domain
|
— |
PTHR45969+56-135+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
110-171
|
1.000
|
1-109
|
1iym_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
19077.160
|
3.937
|
-20.000
|
24.561
|
9.357
|
51.462
|
48.538
|
7.602
|
16.959
|
49.123
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
92.961
|
4.585
|
40.196
|
64.917
|
14.709
|
2.006
|
6.084
|
67.208
|
333.929
|
81.367
|
189.608
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.901
|
3.685
|
0.801
|
-2.174
|
-2.860
|
1.611
|
4.965
|
-3.325
|
— | — | — | — | — |