Hg_chrom5_TN10mRNA_9037
Organism: Heterodera glycines Gene Locus: chr5:857018-859720 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.658 | 1.901 | 0.743 | 1.41 | 0.839 | 1.451 | 0.449 | 1.258 | 1.677 | 1.36 | 1.096 | 2.22 | 1.485 | 0.726 | 1.412 | 0.539 | 0.979 | 0.572 | 0.968 | 0.462 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8500
|
— | — |
1.444
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-Not_Clustered
|
0.798
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
cytoplasm
|
— |
AKRRKGTKRRRRKR,KRRKGTKRRRRKRDS
|
— | — | — | — | — | — |
0.000
|
— | — |
0.351
|
0.051
|
0.029
|
0.469
|
0.297
|
0.294
|
0.322
|
0.052
|
0.344
|
0.178
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000312
|
4.000
|
5.000
|
Hsc_gene_15723.t1;Hsc_gene_1648.t1;Hsc_gene_1652.t1;Hsc_gene_1652.t2;Hsc_gene_8171.t1
|
Hsc_gene_1636.t1
|
— |
Q9LZJ6.1 RING-H2 finger protein ATL5 [Arabidopsis thaliana]
|
XP_052114869.1 E3 ubiquitin-protein ligase SIRP1 [Arachis duranensis]
|
KAI9722497
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.896|GO:0003674_0.658|GO:0009987_0.632|GO:0005575_0.620|GO:0110165_0.620|GO:0016020_0.548|GO:0071944_0.510|GO:0005886_0.506
|
IPR001841+259-303_260-302_260-303+|IPR013083+254-307+
|
SM00184+260-302+
|
PF13639+259-303+Ring_finger_domain
|
— |
PTHR15710+158-306+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
318-318
|
1.000
|
1-317
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
36934.070
|
9.652
|
20.000
|
25.786
|
10.692
|
49.371
|
50.629
|
16.667
|
9.119
|
43.082
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
126.581
|
2.729
|
10.045
|
145.074
|
31.705
|
6.234
|
7.085
|
13.869
|
602.340
|
20.758
|
270.007
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.651
|
5.590
|
3.962
|
-2.226
|
-2.330
|
— |
1.047
|
— | — | — | — | — | — |
No JSON data available for plots.