Hg_chrom5_TN10mRNA_9043
Organism: Heterodera glycines Gene Locus: chr5:882129-884204 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.166 | 1.441 | 0.965 | 0.203 | 1.672 | 1.437 | 0.562 | 1.327 | 1.245 | 1.834 | 1.43 | 1.388 | 0.819 | 0.397 | 0.843 | 0.506 | 0.629 | 0.626 | 0.454 | 0.781 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.849
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.404
|
0.194
|
0.024
|
0.630
|
0.176
|
0.247
|
0.124
|
0.019
|
0.212
|
0.243
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003997
|
2.000
|
1.000
|
Hsc_gene_1626.t1
|
Hsc_gene_1626.t1
|
— |
Q29471.2 Annexin A13 [Canis lupus familiaris]
|
XP_053064131.1 annexin A13 isoform X3 [Acinonyx jubatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.914|GO:0110165_0.909|GO:0016020_0.790|GO:0008150_0.745|GO:0005622_0.732|GO:0043226_0.710|GO:0003674_0.698|GO:0043227_0.647|GO:0009987_0.643|GO:0005737_0.641|GO:0071944_0.630|GO:0043229_0.608|GO:0005488_0.589|GO:0043231_0.551|GO:0005886_0.533
|
IPR001464+129-150_304-319+|IPR018502+120-197_124-159_137-175_195-256_204-256+|IPR037104+40-334_120-181_182-262+
|
SM00335+137-175_204-256+
|
PF00191+124-159_195-256+Annexin
|
G3DSA:1.10.220.10:FF:000002+179-262+Annexin
|
PTHR10502+38-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-74
|
1.000
|
75-339
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.638
|
38513.110
|
6.253
|
-1.500
|
31.563
|
8.850
|
50.737
|
49.263
|
16.224
|
15.339
|
40.413
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1112.015
|
157.685
|
384.713
|
574.249
|
1414.039
|
1198.692
|
1106.435
|
4045.106
|
528.953
|
1138.005
|
876.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.062
|
1.728
|
0.683
|
1.268
|
-0.224
|
— |
1.657
|
-1.730
|
— | — | — | — | — |
No JSON data available for plots.