Hg_chrom5_TN10mRNA_9044
Organism: Heterodera glycines Gene Locus: chr5:882129-884204 Feature type: polypeptideProtein Sequence
Length: 337
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.173 | 1.449 | 0.971 | 0.205 | 1.682 | 1.37 | 0.565 | 1.335 | 1.253 | 1.845 | 1.439 | 1.396 | 0.824 | 0.399 | 0.787 | 0.509 | 0.632 | 0.629 | 0.457 | 0.785 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8506
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.849
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.176
|
0.020
|
0.629
|
0.165
|
0.224
|
0.117
|
0.012
|
0.189
|
0.233
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003997
|
2.000
|
1.000
|
Hsc_gene_1626.t1
|
Hsc_gene_1626.t1
|
— |
Q29471.2 Annexin A13 [Canis lupus familiaris]
|
XP_053064131.1 annexin A13 isoform X3 [Acinonyx jubatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509|GO:0005544
|
GO:0005575_0.913|GO:0110165_0.907|GO:0016020_0.785|GO:0008150_0.743|GO:0005622_0.729|GO:0043226_0.703|GO:0003674_0.676|GO:0043227_0.645|GO:0009987_0.640|GO:0005737_0.638|GO:0071944_0.630|GO:0043229_0.602|GO:0005488_0.561|GO:0043231_0.548|GO:0005886_0.531
|
IPR001464+127-148_302-317+|IPR018502+118-195_122-157_135-173_193-254_202-254+|IPR037104+40-332_118-179_180-260+
|
SM00335+135-173_202-254+
|
PF00191+122-157_193-254+Annexin
|
G3DSA:1.10.220.10:FF:000002+177-260+Annexin
|
PTHR10502+38-330+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-72
|
1.000
|
73-337
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
38228.790
|
6.070
|
-2.500
|
31.454
|
8.902
|
50.445
|
49.555
|
16.024
|
15.430
|
40.653
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
greenyellow
|
1112.015
|
157.685
|
384.713
|
574.249
|
1414.039
|
1198.692
|
1106.435
|
4045.106
|
528.953
|
1138.005
|
876.983
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.062
|
1.728
|
0.683
|
1.268
|
-0.224
|
— |
1.657
|
-1.730
|
— | — | — | — | — |
No JSON data available for plots.