Hg_chrom5_TN10mRNA_9047
Organism: Heterodera glycines Gene Locus: chr5:895585-899714 Feature type: polypeptideProtein Sequence
Length: 352
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.892 | 1.387 | 0.517 | 0.588 | 1.231 | 2.477 | 0.575 | 1.847 | 1.136 | 1.19 | 1.291 | 2.172 | 1.499 | 0.71 | 0.638 | 0.933 | 0.745 | 0.603 | 0.656 | 0.585 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8509
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.852
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.458
|
0.149
|
0.008
|
0.603
|
0.194
|
0.180
|
0.080
|
0.093
|
0.213
|
0.372
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002164
|
2.000
|
2.000
|
Hsc_gene_1622.t1;Hsc_gene_1622.t3
|
— | — | — |
ADY02939.1 rbp-1 protein, partial [Globodera pallida]
|
KAJ8993297
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.960|GO:0003674_0.846|GO:0032502_0.792|GO:0048856_0.792|GO:0009653_0.706|GO:0048646_0.687|GO:0003824_0.675|GO:0051703_0.674|GO:0140096_0.672|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0099120_0.670|GO:0016740_0.668|GO:0016772_0.657|GO:0016773_0.655|GO:0004672_0.654|GO:0016301_0.654|GO:0004712_0.650|GO:0004713_0.650
|
IPR003877+234-306+|IPR043136+150-316+
|
— |
PF00622+234-306+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;158-207;349-352
|
2.000
|
9-157;208-348
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.743
|
40150.890
|
8.691
|
11.500
|
25.568
|
11.932
|
52.273
|
47.727
|
15.341
|
10.227
|
41.761
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
4.519
|
2.743
|
6.230
|
6.033
|
6.583
|
4.001
|
21.515
|
1.107
|
0.000
|
1.693
|
0.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.434
|
-1.965
|
4.428
|
— | — | — | — | — |
No JSON data available for plots.