Hg_chrom5_TN10mRNA_9049
Organism: Heterodera glycines Gene Locus: chr5:902968-904185 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 0.773 | 0.362 | 1.031 | 0.221 | 2.3 | 2.333 | 0.498 | 0.664 | 0.584 | 0.453 | 0.977 | 0.277 | 4.153 | 0.61 | 0.854 | 0.436 | 0.654 | 0.256 | 0.293 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8510
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.566
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
66-87
|
0.997
|
— | — |
0.070
|
— | — |
0.060
|
0.097
|
0.009
|
0.092
|
0.416
|
0.195
|
0.258
|
0.004
|
0.618
|
0.313
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000579
|
5.000
|
2.000
|
Hsc_gene_10517.t1;Hsc_gene_1621.t1
|
Hsc_gene_1621.t1
|
— |
A8XV36.1 Cuticle collagen 144 [Caenorhabditis briggsae]
|
CAB88203.1 putative cuticular collagen [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+8-58_11-58+|IPR008160+149-207_217-275+|IPR050632+12-286+
|
SM01088+8-58+
|
PF01391+149-207_217-275+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-301
|
1.000
|
1-35
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
29249.990
|
8.966
|
9.500
|
10.299
|
3.322
|
31.229
|
68.771
|
6.977
|
3.322
|
71.429
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
3085.126
|
3.749
|
5.038
|
2.853
|
47.775
|
35632.590
|
103.192
|
78.655
|
0.000
|
44.730
|
25.560
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
4.027
|
9.561
|
-8.421
|
-8.937
|
— |
-6.270
|
— | — | — | — |
No JSON data available for plots.