Hg_chrom5_TN10mRNA_9050
Organism: Heterodera glycines Gene Locus: chr5:905214-914044 Feature type: polypeptideProtein Sequence
Length: 946
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.774 | 1.45 | 0.807 | 0.437 | 1.727 | 1.166 | 0.529 | 1.321 | 1.48 | 1.229 | 1.842 | 1.865 | 1.263 | 0.61 | 0.841 | 0.574 | 0.78 | 0.609 | 1.545 | 0.497 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8511
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
nucleus
|
KKRP,RKKKIAKKRADK,RKKEEKKLLEEIKNRKL,RKELEEFFDEAKEKKKNL,KKHLNNNNSELGERKKKIA
|
— | — | — | — |
1-33
|
0.732
|
0.788
|
0.000
|
0.000
|
0.406
|
0.215
|
0.005
|
0.588
|
0.127
|
0.236
|
0.149
|
0.009
|
0.215
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003676
|
2.000
|
1.000
|
Hsc_gene_1620.t1
|
Hsc_gene_1620.t1
|
— | — |
KAI3413237.1 3-phosphoinositide dependent protein kinase-1 [Globodera pallida]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004674|GO:0005524|GO:0006468|GO:0010506
|
GO:0005575_0.782|GO:0110165_0.778|GO:0008150_0.773|GO:0005622_0.738|GO:0003674_0.721|GO:0009987_0.701|GO:0016020_0.664|GO:0043226_0.645|GO:0043229_0.620|GO:0065007_0.613|GO:0050789_0.584|GO:0005737_0.557|GO:0003824_0.541|GO:0050794_0.530|GO:0140096_0.506|GO:0016740_0.503
|
IPR000719+89-456_89-475_91-453+|IPR008271+228-240+|IPR011009+92-476+|IPR017441+95-123+|IPR045269+80-860+
|
SM00220+89-456+
|
PF00069+91-453+Protein_kinase_domain
|
— |
PTHR24348+80-860+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
520-582;844-946
|
2.000
|
1-519;583-843
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.644
|
109931.700
|
9.082
|
26.500
|
33.721
|
10.888
|
53.277
|
46.723
|
18.922
|
14.799
|
39.006
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1548.447
|
16.881
|
375.340
|
281.978
|
45.788
|
13.559
|
7.111
|
51.551
|
7888.928
|
560.682
|
3701.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.247
|
3.927
|
-0.303
|
-2.653
|
-1.742
|
-0.920
|
1.824
|
-2.715
|
3.692
|
-4.662
|
-3.385
|
— | — |