Hg_chrom5_TN10mRNA_9051
Organism: Heterodera glycines Gene Locus: chr5:924705-926336 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.457 | 0.238 | 1.018 | 0.219 | 2.606 | 2.381 | 0.656 | 0.51 | 0.443 | 0.497 | 0.964 | 0.273 | 4.098 | 0.602 | 0.937 | 0.376 | 0.795 | 0.252 | 0.193 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8512
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — |
66-87
|
1.000
|
— | — |
0.021
|
— | — |
0.061
|
0.093
|
0.007
|
0.097
|
0.404
|
0.174
|
0.242
|
0.003
|
0.630
|
0.285
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003999
|
2.000
|
1.000
|
Hsc_gene_1617.t1
|
Hsc_gene_1617.t1
|
— |
A8XV36.1 Cuticle collagen 144 [Caenorhabditis briggsae]
|
CAB88203.1 putative cuticular collagen [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+8-58_11-58+|IPR008160+217-275+|IPR050632+12-286+
|
SM01088+8-58+
|
PF01391+217-275+Collagen_triple_helix_repeat_(20_copies)|PF01484+11-58+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+12-286+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
36-305
|
1.000
|
1-35
|
9han_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.775
|
29381.130
|
9.759
|
13.000
|
10.164
|
3.279
|
31.148
|
68.852
|
7.541
|
2.623
|
71.803
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
5944.091
|
2.597
|
40.766
|
40.253
|
6708.587
|
49572.533
|
2960.090
|
359.178
|
4.112
|
3620.812
|
2070.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.741
|
3.815
|
— |
7.348
|
2.901
|
-4.055
|
-7.236
|
3.194
|
-9.867
|
— | — | — | — |
No JSON data available for plots.