SCN Proteipedia

Hg_chrom5_TN10mRNA_9055

Organism: Heterodera glycines Gene Locus: chr5:937816-948022 Feature type: polypeptide

Protein Sequence

Length: 959

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.164	0.873	1.005	0.431	0.834	1.203	0.931	0.991	0.95	1.0	1.059	1.288	0.927	0.882	1.49	1.341	0.821	0.995	0.642	0.613	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8515	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	0.976

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKRR,RVRK,RRDRLLREVFGHRKFRS,RRGAETDGEREERLRVR,KKLGGASPVFEQQTKKRKR	27-52	0.987	35-75	0.999	—	—	0.000	—	—	0.936	0.046	0.022	0.162	0.012	0.019	0.030	0.028	0.041	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000870	2.000	4.000	Hsc_gene_1614.t1;Hsc_gene_1614.t2;Hsc_gene_1614.t3;Hsc_gene_1614.t4	Hsc_gene_1614.t1;Hsc_gene_1614.t2	—	D4ACP5.1 ATP-dependent DNA helicase Q5 [Rattus norvegicus]	KAI1729408.1 DEAD/DEAH box helicase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0004386\|GO:0005524\|GO:0006310	GO:0008150_0.921\|GO:0009987_0.865\|GO:0005575_0.767\|GO:0110165_0.766\|GO:0003674_0.725\|GO:0008152_0.659\|GO:0005622_0.651\|GO:0044238_0.651\|GO:0071840_0.644\|GO:0043170_0.638\|GO:0016043_0.628\|GO:0043226_0.620\|GO:0050896_0.612\|GO:0006139_0.611\|GO:0043229_0.606\|GO:0016020_0.605\|GO:0090304_0.588\|GO:0006996_0.576\|GO:0003824_0.569\|GO:0051276_0.554\|GO:0051716_0.547\|GO:0006259_0.540\|GO:0016787_0.535\|GO:0006950_0.525\|GO:0032392_0.507\|GO:0071103_0.507\|GO:0043227_0.506\|GO:0033554_0.501	IPR001650+527-677_535-632_550-632+\|IPR004589+261-721+\|IPR011545+274-441+\|IPR014001+267-471_281-455+\|IPR027417+253-461_313-648_462-735+\|IPR032284+671-717+	SM00487+267-471+\|SM00490+550-632+	PF00270+274-441+DEAD/DEAH_box_helicase\|PF00271+535-632+Helicase_conserved_C-terminal_domain\|PF16124+671-717+RecQ_zinc-binding	G3DSA:3.40.50.300:FF:000444+252-462+ATP-dependent_DNA_helicase	PTHR13710+79-890+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-255;725-865;955-959	2.000	256-724;866-954	5lb8_D	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.890	104755.810	10.153	45.500	26.799	8.238	49.635	50.365	16.267	10.532	53.910

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	darkgrey	1309.630	1287.316	1185.611	810.102	892.721	677.196	926.476	591.263	1746.418	2030.810	1908.928

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.349	-0.805	-0.440	—	-0.384	0.462	-0.303	0.791	—	—	—	—	—

No JSON data available for plots.

Back to Browser