Hg_chrom5_TN10mRNA_9057
Organism: Heterodera glycines Gene Locus: chr5:949249-951689 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 1.673 | 0.56 | 0.0 | 1.199 | 1.054 | 0.53 | 1.37 | 1.446 | 1.805 | 1.505 | 1.612 | 0.951 | 0.856 | 1.048 | 0.978 | 0.561 | 0.882 | 0.527 | 0.604 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8516
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.938
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRNWEKMGENKVKERRQ
|
— | — | — | — | — | — |
0.000
|
— | — |
0.331
|
0.778
|
0.022
|
0.257
|
0.073
|
0.017
|
0.040
|
0.204
|
0.041
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004002
|
2.000
|
1.000
|
Hsc_gene_1607.t1
|
Hsc_gene_1607.t1
|
— |
P91478.2 Ribosome-recycling factor, mitochondrial [Caenorhabditis elegans]
|
KAH7722029.1 Protein MRRF-1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000166|GO:0004812|GO:0005524|GO:0006418
|
GO:0005575_0.916|GO:0110165_0.908|GO:0005622_0.852|GO:0005737_0.774|GO:0016020_0.748|GO:0008150_0.710|GO:0043226_0.706|GO:0043229_0.702|GO:0043227_0.650|GO:0043231_0.635|GO:0009987_0.597
|
IPR001412+62-73+|IPR002300+43-95+|IPR014729+22-127+|IPR023584+127-257+|IPR036191+109-286+|IPR050081+4-95+
|
— |
PF00133+43-95+tRNA_synthetases_class_I_(I,_L,_M_and_V)|PF01765+127-257+Ribosome_recycling_factor
|
— |
PTHR42765+4-95+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-292
|
8wo2_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
33155.650
|
10.437
|
18.000
|
28.082
|
8.904
|
49.658
|
50.342
|
17.808
|
10.274
|
42.123
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
greenyellow
|
773.048
|
442.107
|
637.040
|
774.748
|
838.347
|
605.818
|
738.117
|
452.654
|
1274.209
|
743.115
|
970.727
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.298
|
0.672
|
0.391
|
— |
-0.453
|
0.295
|
-0.526
|
0.848
|
— | — | — | — | — |
No JSON data available for plots.