Hg_chrom5_TN10mRNA_9062
Organism: Heterodera glycines Gene Locus: chr5:1003667-1004958 Feature type: polypeptideProtein Sequence
Length: 124
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.688 | 0.563 | 1.32 | 0.556 | 1.478 | 1.241 | 0.576 | 1.21 | 1.434 | 0.981 | 0.611 | 3.795 | 1.568 | 0.155 | 0.987 | 1.037 | 0.661 | 0.489 | 0.0 | 0.949 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8521
|
— | — |
1.222
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9062
|
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.960
|
1.000
|
0.000
|
0.000
|
0.350
|
0.194
|
0.043
|
0.633
|
0.133
|
0.361
|
0.157
|
0.130
|
0.141
|
0.294
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004003
|
2.000
|
1.000
|
Hsc_gene_1603.t1
|
Hsc_gene_1603.t2
|
— | — |
KAF7640022.1 hypothetical protein Mgra_00000467 [Meloidogyne graminicola]
|
KJY61418
|
0.750
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-124
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.928
|
13841.670
|
4.394
|
-7.500
|
27.419
|
11.290
|
45.968
|
54.032
|
11.290
|
16.129
|
45.968
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
38.427
|
36.252
|
187.528
|
44.442
|
7.320
|
5.989
|
6.094
|
90.679
|
17.996
|
12.758
|
15.003
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.140
|
— |
-1.967
|
-2.640
|
— | — |
3.818
|
-3.754
|
— | — | — | — | — |