Hg_chrom5_TN10mRNA_9063
Organism: Heterodera glycines Gene Locus: chr5:1005080-1006292 Feature type: polypeptideProtein Sequence
Length: 169
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.688 | 0.968 | 1.224 | 1.578 | 1.365 | 0.845 | 2.367 | 1.052 | 0.88 | 0.628 | 2.088 | 1.972 | 0.797 | 1.691 | 1.183 | 0.485 | 0.538 | 0.0 | 0.174 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8522
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9063
|
7-ppJ2
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKCLSIFSKPNRSRRS
|
— | — | — | — |
1-21
|
0.960
|
1.000
|
0.000
|
0.000
|
0.161
|
0.429
|
0.078
|
0.120
|
0.062
|
0.021
|
0.044
|
0.043
|
0.160
|
0.957
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004004
|
2.000
|
1.000
|
Hsc_gene_1598.t1
|
Hsc_gene_1598.t1
|
— | — |
KAH7698905.1 Crustacean neurohormone [Aphelenchus avenae]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR031098+92-160_97-153+|IPR035957+93-168_99-156+
|
— |
PF01147+97-153+Crustacean_CHH/MIH/GIH_neurohormone_family
|
— |
PTHR35981+92-160+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99;165-169
|
1.000
|
100-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.540
|
19117.520
|
6.487
|
0.000
|
31.953
|
12.426
|
51.479
|
48.521
|
17.160
|
14.793
|
45.562
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
995.574
|
964.987
|
2864.276
|
1329.775
|
431.955
|
111.294
|
101.826
|
2918.196
|
554.747
|
668.712
|
619.870
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.341
|
0.325
|
-1.000
|
-1.654
|
-1.942
|
— |
4.614
|
-4.702
|
— | — | — | — | — |