Hg_chrom5_TN10mRNA_9067
Organism: Heterodera glycines Gene Locus: chr5:1023052-1024560 Feature type: polypeptideProtein Sequence
Length: 172
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 0.811 | 0.951 | 1.203 | 1.26 | 1.64 | 0.692 | 2.326 | 1.034 | 0.786 | 0.617 | 2.052 | 2.261 | 0.783 | 1.661 | 1.163 | 0.572 | 0.529 | 0.0 | 0.342 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8525
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9067
|
7-Not_Clustered
|
0.910
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KKCLSIFSKPNRSRRS
|
— | — | — | — |
1-29
|
0.735
|
0.916
|
0.000
|
0.000
|
0.154
|
0.465
|
0.097
|
0.117
|
0.076
|
0.026
|
0.053
|
0.043
|
0.163
|
0.946
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004004
|
2.000
|
1.000
|
Hsc_gene_1598.t1
|
— | — | — |
KAH7698905.1 Crustacean neurohormone [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR031098+95-163_100-156+|IPR035957+96-171_102-159+
|
— |
PF01147+100-156+Crustacean_CHH/MIH/GIH_neurohormone_family
|
— |
PTHR35981+95-163+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
41-98;166-172
|
2.000
|
1-40;99-165
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.633
|
19574.070
|
7.127
|
3.000
|
29.651
|
13.953
|
51.163
|
48.837
|
16.860
|
12.791
|
45.930
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
768.957
|
853.950
|
2147.245
|
914.348
|
264.072
|
83.470
|
75.457
|
2655.337
|
363.805
|
468.629
|
423.704
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.102
|
— |
-1.124
|
-1.824
|
-1.647
|
— |
4.893
|
-5.002
|
— | — | — | — | — |