Hg_chrom5_TN10mRNA_9070
Organism: Heterodera glycines Gene Locus: chr5:1032211-1035319 Feature type: polypeptideProtein Sequence
Length: 454
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.563 | 1.486 | 0.681 | 0.684 | 1.211 | 0.791 | 0.787 | 0.771 | 1.86 | 1.25 | 1.435 | 2.203 | 1.53 | 0.678 | 0.899 | 0.724 | 0.722 | 0.834 | 0.508 | 1.36 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8528
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_9070
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
nucleus
|
RKHLITMVDAGKLKKQNK
|
— | — | — | — |
1-21
|
0.969
|
0.998
|
0.000
|
0.000
|
0.319
|
0.369
|
0.009
|
0.294
|
0.412
|
0.203
|
0.354
|
0.034
|
0.273
|
0.192
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001296
|
4.000
|
1.000
|
Hsc_gene_15678.t1
|
— | — |
Q63184.1 Interferon-induced, double-stranded RNA-activated protein kinase [Rattus norvegicus]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
XP_001443721
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.865|GO:0005575_0.822|GO:0110165_0.812|GO:0009987_0.779|GO:0005622_0.744|GO:0003674_0.686|GO:0065007_0.595|GO:0005737_0.589|GO:0050789_0.569|GO:0043226_0.553|GO:0016020_0.552|GO:0003824_0.546|GO:0043229_0.527|GO:0050794_0.502
|
IPR000719+50-359_58-359_59-352+|IPR011009+59-368+
|
SM00220+58-359+
|
PF00069+59-352+Protein_kinase_domain
|
— |
PTHR44167+58-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-454
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.832
|
52141.800
|
9.305
|
16.500
|
26.432
|
12.335
|
45.374
|
54.626
|
15.419
|
11.013
|
42.070
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
75.566
|
0.455
|
3.521
|
259.864
|
129.909
|
11.881
|
12.062
|
6.867
|
50.395
|
133.597
|
97.939
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.713
|
9.008
|
6.295
|
-1.032
|
-3.436
|
— | — |
0.954
|
— | — | — | — | — |