Hg_chrom5_TN10mRNA_9078
Organism: Heterodera glycines Gene Locus: chr5:1066773-1068991 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.655 | 1.638 | 0.576 | 0.85 | 1.291 | 0.722 | 0.755 | 0.528 | 1.878 | 1.475 | 1.014 | 2.486 | 1.272 | 0.542 | 0.934 | 0.604 | 1.097 | 0.8 | 0.813 | 1.243 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8536
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.866
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.411
|
0.367
|
0.007
|
0.406
|
0.360
|
0.193
|
0.289
|
0.165
|
0.220
|
0.069
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001296
|
4.000
|
1.000
|
Hsc_gene_15678.t1
|
Hsc_gene_15678.t1
|
— |
Q63184.1 Interferon-induced, double-stranded RNA-activated protein kinase [Rattus norvegicus]
|
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.829|GO:0005575_0.785|GO:0110165_0.775|GO:0005622_0.689|GO:0009987_0.671|GO:0005737_0.661|GO:0003674_0.600|GO:0016020_0.567|GO:0065007_0.543|GO:0050789_0.516
|
IPR000719+1-189_6-182+|IPR011009+6-197+|IPR050205+6-183+
|
— |
PF00069+6-182+Protein_kinase_domain
|
— |
PTHR24349+6-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
32422.790
|
7.541
|
2.500
|
23.239
|
10.915
|
44.014
|
55.986
|
12.324
|
10.915
|
43.662
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
70.629
|
0.610
|
12.521
|
79.783
|
29.457
|
3.105
|
5.681
|
3.436
|
66.342
|
208.772
|
147.731
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.143
|
6.889
|
2.772
|
-1.471
|
-3.225
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.