Hg_chrom5_TN10mRNA_9079
Organism: Heterodera glycines Gene Locus: chr5:1075213-1077714 Feature type: polypeptideProtein Sequence
Length: 315
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.218 | 1.403 | 0.866 | 0.438 | 0.582 | 1.058 | 1.096 | 1.429 | 0.776 | 1.287 | 0.385 | 1.12 | 1.675 | 0.733 | 0.907 | 1.27 | 0.677 | 1.251 | 0.488 | 1.214 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8537
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— |
57-83
|
0.996
|
40-88
|
0.996
|
1-26
|
0.988
|
1.000
|
0.000
|
0.000
|
0.255
|
0.415
|
0.085
|
0.731
|
0.432
|
0.159
|
0.266
|
0.155
|
0.077
|
0.568
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000581
|
3.000
|
4.000
|
Hsc_gene_15681.t1;Hsc_gene_22527.t1;Hsc_gene_22528.t1;Hsc_gene_22528.t2
|
Hsc_gene_15681.t1
|
— |
A0A0E0RTV6.2 FAD-linked oxidoreductase ZEB1 [Fusarium graminearum PH-1]
|
CAG8493536.1 3526_t:CDS:1 [Funneliformis caledonium]
|
KAI1639289
|
0.510
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0050660|GO:0071949
|
GO:0008150_0.716|GO:0005575_0.576|GO:0110165_0.576
|
IPR006093+72-105+|IPR006094+72-210+|IPR016166+67-247+|IPR016169+49-268+|IPR036318+58-245+|IPR050416+51-268+
|
— |
PF01565+72-210+FAD_binding_domain
|
— |
PTHR42973+51-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-315
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
34069.400
|
6.579
|
0.500
|
18.095
|
13.651
|
41.270
|
58.730
|
9.841
|
8.254
|
56.825
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
38.380
|
1.707
|
7.845
|
6.150
|
8.796
|
10.648
|
13.075
|
9.809
|
18.572
|
132.223
|
83.515
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.975
|
1.719
|
— | — | — | — | — | — | — | — | — | — | — |