Hg_chrom5_TN10mRNA_9082
Organism: Heterodera glycines Gene Locus: chr5:1092776-1094848 Feature type: polypeptideProtein Sequence
Length: 243
(Signal peptide: 1-26)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.244 | 1.244 | 1.122 | 0.568 | 0.549 | 0.95 | 1.225 | 1.235 | 0.823 | 1.001 | 0.499 | 0.726 | 2.058 | 0.396 | 1.344 | 1.293 | 0.54 | 1.309 | 0.317 | 0.968 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8540
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— | — | — |
44-92
|
0.996
|
1-26
|
0.987
|
1.000
|
0.000
|
0.000
|
0.205
|
0.291
|
0.124
|
0.618
|
0.309
|
0.187
|
0.163
|
0.064
|
0.125
|
0.542
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000581
|
3.000
|
4.000
|
Hsc_gene_15681.t1;Hsc_gene_22527.t1;Hsc_gene_22528.t1;Hsc_gene_22528.t2
|
Hsc_gene_15681.t1
|
— |
A0A0E0RTV6.2 FAD-linked oxidoreductase ZEB1 [Fusarium graminearum PH-1]
|
CAG8493536.1 3526_t:CDS:1 [Funneliformis caledonium]
|
KAF3932535
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491|GO:0050660|GO:0071949
|
GO:0008150_0.618|GO:0005575_0.602|GO:0110165_0.602
|
IPR006093+72-105+|IPR006094+72-215+|IPR016166+67-243+|IPR016169+45-240+|IPR036318+58-239+|IPR050416+51-239+
|
— |
PF01565+72-215+FAD_binding_domain
|
— |
PTHR42973+51-239+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-243
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
26329.550
|
7.764
|
4.000
|
21.811
|
13.580
|
43.210
|
56.790
|
12.346
|
9.465
|
57.202
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
11.286
|
0.776
|
3.717
|
6.900
|
6.480
|
3.248
|
6.400
|
6.733
|
2.587
|
34.592
|
20.876
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.033
|
3.025
|
1.000
|
— | — | — | — | — | — | — | — | — | — |