Hg_chrom5_TN10mRNA_9087
Organism: Heterodera glycines Gene Locus: chr5:1124922-1136937 Feature type: polypeptideProtein Sequence
Length: 857
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.289 | 0.977 | 1.082 | 0.644 | 2.178 | 2.274 | 0.403 | 1.342 | 0.57 | 1.766 | 0.778 | 1.51 | 0.259 | 0.292 | 2.048 | 0.7 | 0.746 | 0.46 | 0.09 | 0.137 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8544
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.298
|
0.180
|
0.013
|
0.635
|
0.128
|
0.175
|
0.241
|
0.043
|
0.212
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004006
|
2.000
|
1.000
|
Hsc_gene_15688.t1
|
Hsc_gene_15686.t1;Hsc_gene_15688.t1
|
— |
P85120.1 Protein Daple [Xenopus laevis]
|
KAI1720976.1 girdin like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.942|GO:0110165_0.938|GO:0008150_0.921|GO:0005622_0.901|GO:0065007_0.886|GO:0009987_0.803|GO:0050789_0.789|GO:0050794_0.776|GO:0003674_0.769|GO:0005488_0.769|GO:0005515_0.754|GO:0050896_0.612|GO:0048518_0.610|GO:0048522_0.605|GO:0032502_0.603|GO:0048856_0.603|GO:0051716_0.601|GO:0007154_0.582|GO:0023052_0.576|GO:0007165_0.550|GO:0032501_0.517|GO:0035556_0.512
|
IPR036872+1-45+
|
— | — | — |
PTHR18947+1-856+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-271;311-391;440-644;837-857
|
3.000
|
272-310;392-439;645-836
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.831
|
97983.660
|
5.184
|
-21.500
|
36.873
|
4.201
|
59.393
|
40.607
|
17.853
|
19.020
|
40.490
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
489.459
|
236.555
|
295.596
|
279.125
|
456.206
|
886.450
|
192.594
|
343.689
|
336.177
|
880.423
|
647.174
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.677
|
0.972
|
-2.191
|
-1.477
|
-0.690
|
— | — | — | — | — |
No JSON data available for plots.