Hg_chrom5_TN10mRNA_9091
Organism: Heterodera glycines Gene Locus: chr5:1173381-1179296 Feature type: polypeptideProtein Sequence
Length: 452
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.029 | 1.338 | 0.523 | 0.687 | 0.774 | 0.737 | 0.711 | 1.217 | 1.377 | 1.824 | 0.536 | 1.562 | 1.413 | 0.596 | 0.948 | 1.201 | 1.161 | 1.106 | 1.532 | 0.325 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8548
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.080
|
0.073
|
0.035
|
0.111
|
0.339
|
0.361
|
0.602
|
0.031
|
0.386
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001918
|
3.000
|
1.000
|
Hsc_gene_15696.t1
|
— | — |
Q8IY50.2 Solute carrier family 35 member F3 [Homo sapiens]
|
KAI1724262.1 eamA-like transporter family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0051179_0.872|GO:0051234_0.872|GO:0006810_0.870|GO:0071705_0.739|GO:0015695_0.675|GO:0072348_0.674|GO:0015888_0.670|GO:0051180_0.670
|
IPR026505+121-280+
|
— | — | — |
PTHR19346+121-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-115
|
1.000
|
116-452
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.765
|
49706.770
|
8.068
|
8.500
|
18.142
|
10.619
|
42.257
|
57.743
|
10.619
|
7.522
|
51.327
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
225.092
|
43.346
|
107.005
|
114.735
|
97.115
|
333.181
|
177.403
|
89.125
|
336.924
|
371.368
|
356.606
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.073
|
1.267
|
— |
-0.271
|
1.792
|
-0.900
|
-2.006
|
1.134
|
— | — | — | — | — |
No JSON data available for plots.