Hg_chrom5_TN10mRNA_9092
Organism: Heterodera glycines Gene Locus: chr5:1181330-1183151 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.56 | 1.221 | 0.716 | 0.679 | 1.568 | 1.234 | 0.339 | 1.422 | 1.556 | 1.242 | 1.459 | 1.158 | 1.641 | 0.589 | 1.429 | 1.157 | 0.825 | 0.564 | 1.178 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8549
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRK,KRKH,RKRR,SSRKR,KKITRKIRKSQICKDRLK,KKHQEKFKDKEEAEQKKRD,KFKDKEEAEQKKRDAENKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.951
|
0.129
|
0.017
|
0.260
|
0.069
|
0.034
|
0.037
|
0.008
|
0.035
|
0.023
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001298
|
1.000
|
4.000
|
Hsc_gene_13458.t1;Hsc_gene_14078.t1;Hsc_gene_22161.t1;Hsc_gene_3017.t1
|
Hsc_gene_13458.t1;Hsc_gene_22161.t1;Hsc_gene_3016.t1;Hsc_gene_3017.t1
|
— |
O75132.2 Zinc finger BED domain-containing protein 4 [Homo sapiens]
|
KAI1701143.1 BED zinc finger domain-containing protein [Ditylenchus destructor]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
GO:0005575_0.714|GO:0110165_0.710|GO:0005622_0.685|GO:0008150_0.676|GO:0043226_0.641|GO:0016020_0.637|GO:0043229_0.629|GO:0043227_0.581|GO:0043231_0.561
|
IPR003656+4-56_10-50+|IPR012337+186-432+|IPR052035+3-431+
|
— |
PF02892+10-50+BED_zinc_finger
|
— |
PTHR46481+3-431+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
42-94
|
2.000
|
1-41;95-457
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.764
|
53745.670
|
9.675
|
21.500
|
32.823
|
12.254
|
56.018
|
43.982
|
19.475
|
13.348
|
38.731
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
2.314
|
0.766
|
0.980
|
0.750
|
1.638
|
3.371
|
1.217
|
3.576
|
7.347
|
0.000
|
3.149
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.