Hg_chrom5_TN10mRNA_9103
Organism: Heterodera glycines Gene Locus: chr5:1300318-1310390 Feature type: polypeptideProtein Sequence
Length: 1,224
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.368 | 0.98 | 0.169 | 1.607 | 1.152 | 0.574 | 0.858 | 1.325 | 1.137 | 1.349 | 1.73 | 1.339 | 0.566 | 1.684 | 1.039 | 0.603 | 0.743 | 1.006 | 0.505 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8560
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
GKKRKFRKP,KKSGSESSNSLLKRRQS,RKESLDKIEALVKAKRL,RKVREAQEKAKMAKRKTT,RRETERWVPRQREIKRLYR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.258
|
0.243
|
0.029
|
0.579
|
0.091
|
0.216
|
0.112
|
0.068
|
0.287
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009133
|
1.000
|
1.000
|
Hsc_gene_15711.t1
|
Hsc_gene_15708.t1
|
— | — | — |
KAH0534141
|
0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;92-335;1043-1091;1211-1224
|
3.000
|
3-91;336-1042;1092-1210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.779
|
141810.510
|
9.864
|
36.500
|
33.905
|
9.559
|
55.229
|
44.771
|
18.873
|
15.033
|
41.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
darkolivegreen
|
425.773
|
11.321
|
86.535
|
367.101
|
103.587
|
24.223
|
51.898
|
16.834
|
732.643
|
1065.214
|
922.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.706
|
4.882
|
2.192
|
-1.855
|
-2.082
|
1.110
|
— |
1.767
|
— | — |
-2.865
|
— | — |
No JSON data available for plots.