Hg_chrom5_TN10mRNA_9104
Organism: Heterodera glycines Gene Locus: chr5:1312201-1317338 Feature type: polypeptideProtein Sequence
Length: 550
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 1.395 | 1.025 | 0.94 | 1.121 | 1.399 | 0.563 | 1.091 | 0.808 | 1.253 | 0.771 | 2.353 | 2.071 | 0.664 | 1.039 | 0.961 | 0.745 | 0.854 | 1.678 | 0.749 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8561
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKRRRK,KKRNALYRDFKKNKN
|
— | — | — | — | — | — |
0.000
|
— | — |
0.028
|
0.156
|
0.019
|
0.135
|
0.326
|
0.330
|
0.254
|
0.004
|
0.545
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009134
|
1.000
|
1.000
|
Hsc_gene_15712.t1
|
Hsc_gene_15712.t1
|
— |
A8WVX4.3 Innexin-19 [Caenorhabditis briggsae]
|
NP_491212.1 Innexin [Caenorhabditis elegans];CCD73401.1 Innexin [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.895|GO:0110165_0.895|GO:0008150_0.844|GO:0009987_0.719|GO:0030054_0.643|GO:0051179_0.577|GO:0006810_0.572|GO:0051234_0.572|GO:0016020_0.558|GO:0032501_0.550|GO:0065007_0.550|GO:0005886_0.536|GO:0071944_0.536|GO:0003674_0.529|GO:0050789_0.524|GO:0005911_0.521|GO:0070161_0.521
|
IPR000990+10-543_13-378_19-318_71-80_101-123_196-210_246-255_271-287+
|
— |
PF00876+19-318+Innexin
|
— |
PTHR11893+10-543+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
341-487;530-550
|
2.000
|
1-340;488-529
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.498
|
63453.290
|
5.657
|
-6.000
|
24.727
|
14.364
|
47.455
|
52.545
|
12.364
|
12.364
|
46.364
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
252.647
|
22.699
|
58.158
|
158.581
|
360.743
|
703.292
|
363.582
|
616.947
|
4.660
|
245.334
|
142.188
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.128
|
2.667
|
1.555
|
1.156
|
0.976
|
-0.943
|
-0.294
|
-0.622
|
-5.864
|
5.373
|
— | — | — |
No JSON data available for plots.