Hg_chrom5_TN10mRNA_9105
Organism: Heterodera glycines Gene Locus: chr5:1330144-1334741 Feature type: polypeptideProtein Sequence
Length: 566
(Signal peptide: 1-31)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.801 | 1.233 | 0.996 | 1.036 | 1.207 | 0.861 | 0.862 | 1.413 | 1.178 | 0.836 | 0.937 | 1.351 | 0.785 | 1.019 | 1.082 | 1.262 | 0.84 | 0.75 | 0.951 | 1.507 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8562
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RRRR,KKLLAEHNEKVQKKLLK,KKLLKQAKALEKDEKYQQRMKEQKAARARLPKEKR
|
— | — | — | — |
1-31
|
0.811
|
0.551
|
0.000
|
0.000
|
0.237
|
0.137
|
0.077
|
0.237
|
0.185
|
0.047
|
0.182
|
0.011
|
0.181
|
0.849
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002165
|
1.000
|
3.000
|
Hsc_gene_15727.t1;Hsc_gene_15728.t1;Hsc_gene_2216.t1
|
Hsc_gene_15727.t1;Hsc_gene_15728.t1;Hsc_gene_2216.t1
|
— |
Q7JLI1.1 Zinc metalloproteinase nas-31 [Caenorhabditis elegans]
|
KAI1698134.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270|GO:0018996
|
GO:0008150_0.776|GO:0005575_0.672|GO:0110165_0.662|GO:0003674_0.586|GO:0032501_0.528
|
IPR000742+420-431+|IPR001506+188-385_196-384_218-236_274-292_293-310_332-347_371-384+|IPR006026+193-337+|IPR017050+47-566+|IPR024079+112-385+|IPR034035+203-383+
|
SM00235+193-337+
|
PF01400+196-384+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+94-467+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-135
|
1.000
|
136-566
|
3vtg_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.760
|
63394.090
|
6.594
|
1.000
|
27.032
|
12.014
|
49.647
|
50.353
|
14.311
|
12.721
|
52.120
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
9285.762
|
10.588
|
12.990
|
20.657
|
30.174
|
5215.256
|
33.711
|
100465.045
|
1.028
|
953.780
|
545.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.828
|
0.778
|
0.513
|
7.449
|
-7.260
|
4.174
|
-11.399
|
-9.666
|
4.231
|
-4.480
|
— | — |