Hg_chrom5_TN10mRNA_9106
Organism: Heterodera glycines Gene Locus: chr5:1336556-1338829 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.854 | 1.051 | 0.719 | 0.195 | 1.507 | 1.014 | 0.336 | 0.565 | 0.879 | 0.916 | 1.284 | 1.662 | 0.942 | 0.652 | 2.306 | 1.937 | 1.111 | 0.514 | 0.869 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8563
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.815
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
19-43
|
0.953
|
11-45
|
0.997
|
— | — |
0.000
|
— | — |
0.243
|
0.217
|
0.070
|
0.661
|
0.060
|
0.230
|
0.208
|
0.041
|
0.497
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009135
|
1.000
|
1.000
|
Hsc_gene_15731.t1
|
Hsc_gene_15729.t1;Hsc_gene_15731.t1
|
— |
F1N8V3.2 Phosphatase and actin regulator 4 [Gallus gallus]
|
KAI3419756.1 phosphatase and actin regulator 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.777|GO:0110165_0.775|GO:0005622_0.750|GO:0016020_0.709|GO:0043226_0.606|GO:0043229_0.597|GO:0008150_0.577|GO:0043227_0.550|GO:0009987_0.544|GO:0043231_0.523
|
— | — | — | — |
PTHR12751+62-177+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-94;132-177
|
1.000
|
95-131
|
6zee_V
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.714
|
20363.930
|
10.763
|
13.000
|
33.898
|
7.345
|
62.712
|
37.288
|
20.904
|
12.994
|
46.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
610.306
|
504.955
|
128.140
|
280.579
|
104.289
|
24.036
|
43.152
|
200.648
|
145.123
|
2079.070
|
1250.235
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.207
|
-0.985
|
1.238
|
-1.459
|
-2.103
|
0.860
|
2.967
|
-2.074
|
— | — |
-3.961
|
— | — |
No JSON data available for plots.