SCN Proteipedia

Hg_chrom5_TN10mRNA_9107

Organism: Heterodera glycines Gene Locus: chr5:1344903-1360567 Feature type: polypeptide

Protein Sequence

Length: 1,540

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.778	1.087	0.838	0.582	0.974	1.066	0.696	1.753	1.457	1.29	0.561	1.451	1.984	0.924	1.537	0.788	0.852	0.935	1.149	0.84	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8564	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.970

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	QKRKK,RVLKRRS,KRKKMGMLFEPGSNLRKKS,RKKMGMLFEPGSNLRKKSP	3-29	0.973	—	—	—	—	0.000	—	—	0.031	0.072	0.083	0.130	0.498	0.576	0.425	0.004	0.725	0.048

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004009	1.000	2.000	Hsc_gene_15733.t1;Hsc_gene_15733.t2	Hsc_gene_15732.t1;Hsc_gene_15733.t1;Hsc_gene_15733.t2	—	O61213.2 Dual oxidase 1 [Caenorhabditis elegans]	AAY84711.2 dual oxidase [Meloidogyne incognita]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004601\|GO:0005509\|GO:0006979\|GO:0016491\|GO:0020037	GO:0008150_0.867\|GO:0009987_0.776\|GO:0005575_0.772\|GO:0110165_0.772\|GO:0003674_0.754\|GO:0016020_0.691\|GO:0071944_0.663\|GO:0005886_0.655\|GO:0050896_0.636\|GO:0003824_0.570\|GO:0006950_0.529\|GO:0032502_0.506\|GO:0048856_0.506\|GO:0065007_0.501	IPR002048+861-891_862-925_895-930_899-927+\|IPR010255+43-584+\|IPR011992+830-983+\|IPR013112+1257-1356+\|IPR013121+1365-1521+\|IPR013130+1086-1218+\|IPR017927+1253-1360+\|IPR017938+1257-1356+\|IPR018247+908-920+\|IPR019791+36-595_45-572_112-127_247-265_265-285_290-316_342-352+\|IPR034821+48-606+\|IPR037120+32-593+\|IPR039261+1348-1525_1355-1540+\|IPR050702+41-576+	SM00054+861-891_899-927+	PF01794+1086-1218+Ferric_reductase_like_transmembrane_component\|PF03098+45-572+Animal_haem_peroxidase\|PF08022+1257-1356+FAD-binding_domain\|PF08030+1365-1521+Ferric_reductase_NAD_binding_domain	G3DSA:1.10.640.10:FF:000004+40-592+Dual_oxidase_2\|G3DSA:2.40.30.10:FF:000195+1253-1352+DUal_OXidase\|G3DSA:3.40.50.80:FF:000020+1357-1540+Dual_oxidase_1	PTHR11475+41-576+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-1540	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.700	176987.440	8.357	39.000	25.195	15.000	44.740	55.260	14.740	10.455	45.195

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	lightyellow	1070.332	544.730	453.576	857.502	1356.758	2849.231	1572.253	781.698	5.647	1522.564	872.457

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.495	0.517	1.029	0.630	1.086	-0.848	-1.974	1.151	-8.302	7.602	—	—	—

No JSON data available for plots.

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